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There are alot of fake bearings about so they may not be Koyo. What is listed on the Koyo site?Looking at another cataloge that I have to have they use the R6 ref numbers and list R6 as 7/32 and R6ZZ and R62RS both as 9/32 As you have EE3ZZ on the boxes not EE3 they are more than likely to be labeled correctly. What was the actual listing?
That was a reseller's site or what google found, I could not find EE3 or EE3S on Koyo's (JTEKT) site by entering those numbers in the search box. They only seem to have roller bearings in imperial all the ball ones I can see are metric.
Interference between plugs, their caps, and the carb, its mounting studs and nut could be a problem.
I thought the carb was centrally mounted and you had the choice of exhaust at either end.
If you are going to go that far and modify the cover to take the carb. Might as well just make a new cover with the bosses positioned to suit a new stud layout and keep the manifold the right way up.